search

ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
152 stars 20 forks source link

No escape.matrix or runEscape function #127

Closed kangjiajinlong closed 1 month ago

kangjiajinlong commented 1 month ago

Hello,

I installed the escape package with BiocManager::install("escape"). It seems that there is no escape.matrix or runEscape function as shown in the example code. I could only find enrichIt function, which also seems to be incompatible with Seurat V5.

Thanks, Jack

ncborcherding commented 1 month ago

Hey Jack,

This is due to the version of BioCondcutor you are installing from - you are installing an outdated release.

BiocManager::install(version="3.19")
BiocManager::install("escape")

Hope that helps and let me know if you have any other issues.

Nick