Closed NoemieL closed 8 months ago
Hey NoemieL,
I think you are experiencing the issue due to the size of your data - the enrichmentPlot()
itself is calculating the gene ranks across every group and cell. Which is not optimal when it comes to large data sets.
Let me see how I can modify to optimize for speed and memory.
Nick
Hi Nick, Any update? Thanks
Hey NoemieL,
Sorry do not have a timeline, I am on clinical services for the next week and will not have time to code a solution.
Nick
Hi, I am using this package for GSEA on scRNA extracted from a ArchR project as a SingleCellExperiment object. I was able to use enrichIt however when I run enrichmentPlot it is not finishing even after 12h and it is taking a lot of memory (around 50G). Is it normal? Do you have any idea why it is so long? Here is my code: "'