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ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
143 stars 20 forks source link

performNormalization speed #77

Closed ncborcherding closed 7 months ago

ncborcherding commented 7 months ago

performNormalization() is calculating on the fly the genes within the gene sets present in individual cells. For large single-cell objects +/- large gene sets, this can take awhile.

Like #76 Will look into rcpp integration

ncborcherding commented 7 months ago

Added a scale.factor argument to allow users to directly pass any previous quantification.

Will be working on faster calculation of genes per gene set per cell.