ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
152 stars 20 forks source link

Aboout function “runEscape” and “performNormalization” #94

Closed DylanGuo1101 closed 7 months ago

DylanGuo1101 commented 7 months ago

https://www.borch.dev/uploads/screpertoire/articles/running_escape I can't find this function in the version ‘1.12.0’ as follows.

packageVersion('escape') [1] ‘1.12.0’

Is this because of the version? How to install the latest version of escape? I have tried devtools and BiocManager to install.

Looking forward to your reply, thanks!

ncborcherding commented 7 months ago

Hey Dylan,

The vignette is for v2 of escape - to install, you will need to first intall an update version of GSVA then escape from the github repo.

devtools::install_github("rcastelo/GSVA")
devtools::install_github("ncborcherding/escape")

Nick