Open Ashesltz opened 2 years ago
Hi, From the published paper, you can find that the software only deals with 5 types of reads in your target regions, because the reads on your target region don't meet requirements for editing, that why you got all reads were filtered.
could you tell me how to find the target region with 5 types of reads
------------------ 原始邮件 ------------------ 发件人: "nccl-jmli/VarBen" @.>; 发送时间: 2021年12月17日(星期五) 下午2:37 @.>; @.**@.>; 主题: Re: [nccl-jmli/VarBen] cnv (Issue #21)
Hi, From the published paper, you can find that the software only deals with 5 types of reads in your target regions, because the reads on your target region don't meet requirements for editing, that why you got all reads were filtered.
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I realized that some users may not understand the parameters correctly, there is a parameter -l
in sveditor.py
, you need to set this value to the read length of input Bam
file, otherwise, all reads will be filtered out. Please check the -l
parameter in your script.
-l READLENGTH, --readlength READLENGTH read length of bam reads
why i usually get invalid mutation 'All reads is filtered in this scope, total & filtered reads num 3716'