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ncg716 / gorman_rrnanalysis_2024

Code Club Project from Youtube--ASV Utilities
MIT License
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Project Bibliography #5

Open ncg716 opened 6 months ago

ncg716 commented 6 months ago

Use this issue to accumulate citations of paper that are relevant to the project. Cite papers in the following format:

APA citation, ending with DOI.

Brief summary.

Reasons for citation/relevance to project.

.pdf files of these papers can be saved in a personal .literature/ folder to avoid clogging the repository.

ncg716 commented 6 months ago

Huse, S. M., Welch, D. M., Morrison, H. G., & Sogin, M. L. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental microbiology, 12(7), 1889–1898. https://doi.org/10.1111/j.1462-2920.2010.02193.x

ncg716 commented 6 months ago

Eren, A. M., Maignien, L., Sul, W. J., Murphy, L. G., Grim, S. L., Morrison, H. G., & Sogin, M. L. (2013). Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. Methods in ecology and evolution, 4(12), 1111–1119. https://doi.org/10.1111/2041-210X.12114

ncg716 commented 6 months ago

Callahan, B. J., McMurdie, P. J., & Holmes, S. P. (2017). Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. The ISME journal, 11(12), 2639–2643. https://doi.org/10.1038/ismej.2017.119

ncg716 commented 6 months ago

Sun, D. L., Jiang, X., Wu, Q. L., & Zhou, N. Y. (2013). Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity. Applied and environmental microbiology, 79(19), 5962–5969. https://doi.org/10.1128/AEM.01282-13