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ncg716 / gorman_rrnanalysis_2024

Code Club Project from Youtube--ASV Utilities
MIT License
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Project Bibliography #5

Open ncg716 opened 10 months ago

ncg716 commented 10 months ago

Use this issue to accumulate citations of paper that are relevant to the project. Cite papers in the following format:

APA citation, ending with DOI.

Brief summary.

Reasons for citation/relevance to project.

.pdf files of these papers can be saved in a personal .literature/ folder to avoid clogging the repository.

ncg716 commented 10 months ago

Huse, S. M., Welch, D. M., Morrison, H. G., & Sogin, M. L. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental microbiology, 12(7), 1889–1898. https://doi.org/10.1111/j.1462-2920.2010.02193.x

ncg716 commented 10 months ago

Eren, A. M., Maignien, L., Sul, W. J., Murphy, L. G., Grim, S. L., Morrison, H. G., & Sogin, M. L. (2013). Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. Methods in ecology and evolution, 4(12), 1111–1119. https://doi.org/10.1111/2041-210X.12114

ncg716 commented 10 months ago

Callahan, B. J., McMurdie, P. J., & Holmes, S. P. (2017). Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. The ISME journal, 11(12), 2639–2643. https://doi.org/10.1038/ismej.2017.119

ncg716 commented 10 months ago

Sun, D. L., Jiang, X., Wu, Q. L., & Zhou, N. Y. (2013). Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity. Applied and environmental microbiology, 79(19), 5962–5969. https://doi.org/10.1128/AEM.01282-13