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nch-igm / snvstory

Rapid and accurate ancestry inference using SNVs.
BSD 3-Clause "New" or "Revised" License
15 stars 8 forks source link

Docker images available? #7

Closed lcoombe closed 8 months ago

lcoombe commented 8 months ago

Hello,

Do you have any pre-built docker images available? I do not have root access on my machines, so cannot run docker, but can run built docker images using singularity.

Alternatively, could SNVstory be installed using a virtual environment (following the dependencies in the Dockerfile)?

Thanks! Lauren

andreirajkovic commented 8 months ago

Hi @lcoombe you can find the docker image for this version here: docker pull heritagehelix/snvstory:3.0.0 And while I personally haven't I'm pretty sure you could build SNVstory using a virtual environment. There would be some tricks to making sure your environment played nice with the correct numba version; we've run into lots of issues there.

Let me know if that Docker worked for you or if you have any other questions.

lcoombe commented 8 months ago

I'll give that docker image a try - thank you so much!