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ncihtan / HTAN-data-curator

HTAN Data Ingest Shiny App
https://sagebio.shinyapps.io/HTAN-data-curator/
Apache License 2.0
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Data Dashboard causes disconnect for HTAN HMS #54

Open adamjtaylor opened 1 year ago

adamjtaylor commented 1 year ago

Logs suggest this is similar to #53 and #48 

2022-11-29T10:28:09.795912+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 366, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.796532+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 367, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.797038+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 368, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.797567+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 369, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.798106+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 370, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.798584+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 371, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.799063+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 372, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.799546+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 373, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.800137+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 374, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.800716+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 375, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.801220+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 376, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.801727+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 377, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.802213+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 378, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.802688+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 379, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.803166+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 380, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.803674+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 381, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.804327+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 382, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.804831+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 383, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.805332+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 384, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.805846+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 385, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.806332+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 386, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.806803+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 387, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.807321+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 388, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.807950+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 389, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.808430+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 390, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.809068+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 391, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.809593+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 392, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.810080+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 393, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.810569+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 394, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.811159+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 395, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.811692+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 396, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.812172+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 397, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.812646+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 398, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:09.813131+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:09] root - For the attribute 'Pixels BigEndian', on row 399, 'FALSE' is not one of ['False', 'True'].
2022-11-29T10:28:10.425686+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:10] root - On row 2 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:28:10.425746+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:10] root - On row 3 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:28:10.425855+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:28:10] root - On row 4 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:28:12.947325+00:00 shinyapps[5806160]: Warning in parallel::mclapply(1:nrow(metadata), function(i) { :
2022-11-29T10:28:12.947365+00:00 shinyapps[5806160]:   scheduled core 5 encountered error in user code, all values of the job will be affected
2022-11-29T10:28:13.033972+00:00 shinyapps[5806160]: Warning: Error in bind_rows: Argument 5 must have names.
2022-11-29T10:28:13.046654+00:00 shinyapps[5806160]:   15: <Anonymous>
2022-11-29T10:28:13.046682+00:00 shinyapps[5806160]:   13: fn
2022-11-29T10:28:13.046690+00:00 shinyapps[5806160]:    8: retry
2022-11-29T10:28:13.046695+00:00 shinyapps[5806160]:    7: connect$retryingStartServer
2022-11-29T10:28:13.046699+00:00 shinyapps[5806160]:    6: eval
2022-11-29T10:28:13.046702+00:00 shinyapps[5806160]:    5: eval
2022-11-29T10:28:13.046706+00:00 shinyapps[5806160]:    4: eval
2022-11-29T10:28:13.046716+00:00 shinyapps[5806160]:    3: eval
2022-11-29T10:28:13.046719+00:00 shinyapps[5806160]:    2: eval.parent
2022-11-29T10:28:13.046725+00:00 shinyapps[5806160]:    1: local
aclayton555 commented 1 year ago

Included in escalation to FAIR in this issue: https://sagebionetworks.jira.com/servicedesk/customer/portal/5/IBCSPRT-115