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ncihtan / HTAN-data-curator

HTAN Data Ingest Shiny App
https://sagebio.shinyapps.io/HTAN-data-curator/
Apache License 2.0
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Data Dashboard causes disconnect for HTAN MSK #56

Open adamjtaylor opened 2 years ago

adamjtaylor commented 2 years ago

Logs

2022-11-29T10:53:50.654678+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 39 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.654740+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 40 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.654835+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 43 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.654896+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 44 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.654976+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 45 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655069+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 46 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655121+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 47 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655204+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 52 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655258+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 53 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655340+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 54 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655402+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 56 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655545+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 57 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.655590+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 59 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694452+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 61 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694482+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 62 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694501+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 63 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694507+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 64 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694512+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 66 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694521+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 67 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694525+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 68 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694528+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 69 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694535+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 71 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694539+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 73 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694542+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 75 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694546+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 76 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694549+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 79 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694576+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 81 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694605+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 82 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694612+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 84 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694616+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 85 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694619+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 86 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694622+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 87 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.694641+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - On row 88 the attribute Days to Recurrence does not contain the proper value type int.
2022-11-29T10:53:50.751339+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - For the attribute 'Progression or Recurrence', on row 22, 'unknown' is not one of ['Yes - Progression or Recurrence', 'Unknown', 'No', 'Not Reported'].
2022-11-29T10:53:50.755168+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - For the attribute 'Progression or Recurrence', on row 31, 'unknown' is not one of ['Yes - Progression or Recurrence', 'Unknown', 'No', 'Not Reported'].
2022-11-29T10:53:50.760118+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - For the attribute 'Progression or Recurrence', on row 42, 'unknown' is not one of ['Yes - Progression or Recurrence', 'Unknown', 'No', 'Not Reported'].
2022-11-29T10:53:50.807601+00:00 shinyapps[5806160]: ERROR: [2022-11-29 10:53:50] root - For the attribute 'Progression or Recurrence', on row 78, 'unknown' is not one of ['Yes - Progression or Recurrence', 'Unknown', 'No', 'Not Reported'].
2022-11-29T10:53:51.376417+00:00 shinyapps[5806160]: Warning in parallel::mclapply(1:nrow(metadata), function(i) { :
2022-11-29T10:53:51.376455+00:00 shinyapps[5806160]:   scheduled core 8 encountered error in user code, all values of the job will be affected
2022-11-29T10:53:51.466480+00:00 shinyapps[5806160]: Warning: Error in bind_rows: Argument 8 must have names.
2022-11-29T10:53:51.479487+00:00 shinyapps[5806160]:   15: <Anonymous>
2022-11-29T10:53:51.479522+00:00 shinyapps[5806160]:   13: fn
2022-11-29T10:53:51.479527+00:00 shinyapps[5806160]:    8: retry
2022-11-29T10:53:51.479531+00:00 shinyapps[5806160]:    7: connect$retryingStartServer
2022-11-29T10:53:51.479534+00:00 shinyapps[5806160]:    6: eval
2022-11-29T10:53:51.479537+00:00 shinyapps[5806160]:    5: eval
2022-11-29T10:53:51.479551+00:00 shinyapps[5806160]:    4: eval
2022-11-29T10:53:51.479554+00:00 shinyapps[5806160]:    3: eval
2022-11-29T10:53:51.479557+00:00 shinyapps[5806160]:    2: eval.parent
2022-11-29T10:53:51.479560+00:00 shinyapps[5806160]:    1: local
aclayton555 commented 1 year ago

Included in escalation to FAIR in this issue: https://sagebionetworks.jira.com/servicedesk/customer/portal/5/IBCSPRT-115