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ncihtan / data-models

Schema.org Data Models for HTAN
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Data Model Updates for CosMx RFC #379

Closed PozhidayevaDarya closed 2 months ago

PozhidayevaDarya commented 3 months ago

RFC document is in progress and can be found here: https://docs.google.com/document/d/1cQ035OUx5CLFfJdQiJdotggpLyjg6a8KOycbsCH6MHw/edit#heading=h.onb0ee2qamgt

Issue for this PR can be found here: https://github.com/ncihtan/data-models/issues/370

Note: CosMx will need to be added to the model first, then Xenium. This is because there are some redundant variables. The current status of these items is subject to change.

adamjtaylor commented 3 months ago

Thank you @PozhidayevaDarya! Currently failing checks in two places

First

"Surface Area" used in component "Nanostring CosMx SMI Experiment" is not defined in the data model
"Percent Total Transcripts within Cells" used in component "Nanostring CosMx SMI Experiment" is not defined in the data model

Second 

"Percent of Transcripts within Cells" is is not used by any component