adamjtaylor
commented
3 months ago Thanks @PozhidayevaDarya!
We currently fail one of our checks due to the missing attributes that I presume are in the CosMX PR.
Would you add them here as well so we can ensure date model integrity
"ROI Name" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Panel Name" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Total Number of Cells" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Total Number of Targets" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Surface Area" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Experiment IF Channels" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Transcripts per Cell" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Percent of Transcripts within Cells" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"ROI Name" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Panel Name" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Total Number of Cells" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Total Number of Targets" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Surface Area" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Experiment IF Channels" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Transcripts per Cell" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
"Percent of Transcripts within Cells" used in component "10X Genomics Xenium ISS Experiment" is not defined in the data model
RFC document is in progress and can be found here: https://docs.google.com/document/d/1QOQu6touT2Y5RKGc662cf5vY6WULUmZlKkqrQyOUWfo/edit#heading=h.onb0ee2qamgt
Issue for this PR can be found here: https://github.com/ncihtan/data-models/issues/369
Note: CosMx will need to be added to the model first, then Xenium. This is because there are some redundant variables. The current status of these items is subject to change.