investigate how we are showing pre cancer types

[inodb]

There should be some field to indicate whether the sample is actually precancerous

From Nithya:

There is a field in Biospecimen - TUMOR_TISSUE_TYPE it currently has the following enumerations: Additional Primary

• Local recurrence
• Metastatic
• NOS
• Premalignant
• Primary
• Recurrent Premalignant/in situ -Atypia/hyperplasia we are adding the following in the next update to the same attribute
• Normal -Normal adjacent -Normal distant -Post therapy -Post therapy neoadjuvant -Post therapy adjuvant

[inodb]

@adamabeshouse could you help with adding a another filter called Tissue Type after Disease Type that lists these fields ☝️

[adamabeshouse]

@inodb is this already part of the data?

[inodb]

@adamabeshouse yes - should be there

EDIT: it is not, see below

[inodb]

Update on this

We are trying to figure out how to show the pre cancer types in the data portal. I recall we can use the TUMOR_TISSUE_TYPE field mentioned here: This has fields like: Additional Primary, Local recurrence, Metastatic, Premalignant, Primary, Recurrent, Not Otherwise Specified, Premalignant - in situ, Atypia - hyperplasia I do see that e.g. MSK filled it in. But for some reason we don’t see e.g. ‘Local recurrence’ in the synapse JSON. Any idea? Do we need to change the schema version on our end?