Closed navyashukla-uom closed 9 months ago
Hello, I've getting the following error when I try to calculate my residuals:
Discordant tree topology detected - gene/trait tree and treesObj$masterTree have irreconcilable topologies
However, I'm not sure why (please forgive me if I'm misunderstanding something):
The genes trees all have the same topology (constrained to have this)
All species are present in all gene trees.
Given that the master tree is being estimated from the gene trees, I don't understand how it can be discordant? rer_input.txt
Hello, I've getting the following error when I try to calculate my residuals:
Discordant tree topology detected - gene/trait tree and treesObj$masterTree have irreconcilable topologies
However, I'm not sure why (please forgive me if I'm misunderstanding something):
The genes trees all have the same topology (constrained to have this)
All species are present in all gene trees.
Given that the master tree is being estimated from the gene trees, I don't understand how it can be discordant? rer_input.txt