question about getAllResiduals

nclark-lab / RERconverge

Analysis of convergence between organismal traits and DNA/protein sequences

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question about getAllResiduals #97

Open SWei2333 opened 4 months ago

SWei2333 commented 4 months ago

Hi,

I have obtained several gene trees from the gene.msa files using estimatePhangornTreeAll, and I noticed that the gene trees are unrooted. Is it necessary to root the trees before running getAllResiduals?