normalize tile - Githubissues

ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning

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normalize tile #115

Closed jessiya825 closed 7 months ago

jessiya825 commented 2 years ago

Hi, I am interested in your work! But when I run '0b_tileLoop_deepzoom4.py', I have no idea to normalize tiles. How did you obtain the value of 'NormVec' ?

ncoudray commented 2 years ago

Hi -

first, I would advice to use the latest version (0b_tileLoop_deepzoom6.py). To get the values for the normalization, one can you the "00_preprocessing/Get_Labstats_From_jpeg.py" script on a reference tile or image of your choice.