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ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning
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Reference image for Vahadane normalization #139

Closed bswhite closed 10 months ago

bswhite commented 1 year ago

Hi @ncoudray,

Thank you for generously sharing your trained models with myself and others.

I would like to apply these to an external dataset. To do so, it seems I need to normalize my images into the same color space that was used to train them. Would you please share the reference image you used for training the normal/LUAD/LUSC classifier and whether you used Vahadane or Reinhard normalization?

This is related to a closed issue: https://github.com/ncoudray/DeepPATH/issues/78

But, again, if I'm not mistaken, we need to use the same "representative" image that you mention in that issue.

Thank you, Brian

ncoudray commented 1 year ago

Hi -

we used the option "-N '57,22,-8,20,10,5'" to apply the Reinhard normalization.

Best N.

bswhite commented 1 year ago

Fantastic! Thank you, @ncoudray.