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ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning
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JSON file #140

Open suminwei opened 7 months ago

suminwei commented 7 months ago

Hello, I am trying to run step 2.2 presorting in DeepPATH, and I seem to not be able download the right JSON file that contains all the necessary information. What are the exact steps to download the correct json file with all the necessary keys DeepPATH is looking for? Thank you! Lisa

ncoudray commented 7 months ago

Hi Lisa -

The json file required here was the one downloaded from the legacy website. The format has changed since but the code has not been updated to deal with this new format. You can either modify the code to make it compatible with the JSON you downloaded, or, maybe more easily, use option 14 (which is the one we are now using): make a text file with 1st column being the image ID and second the label associated with it

Best, Nicolas

suminwei commented 7 months ago

Hi @ncoudray - thank you! Sorry I didn't see the explanation in the documentation. Changing to option 14 seemed to have worked.