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ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning
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The problem of the JSON file download. #16

Closed Docurdt closed 5 years ago

Docurdt commented 5 years ago

I have tried a lot for downloading a right JSON file for the data split step. As shown in the image, after I added all the slide images into the cart, I can download the "manifest" file as well as "metadata" file, but the content of the metadata file is not the same with you used, some keys are missed, but I can find them in the "Biospecimen" file or "Clinical" file. Could you help me to figure it out to obtain a corrected JSON file? Thank you very much!

screen shot 2018-10-29 at 22 41 12
ncoudray commented 5 years ago

We used the legacy GDC portal (https://portal.gdc.cancer.gov/legacy-archive) from which the images can be accessed as well. HTH

Docurdt commented 5 years ago

We used the legacy GDC portal (https://portal.gdc.cancer.gov/legacy-archive) from which the images can be accessed as well. HTH

Thank you very much, It works now!