Use 0b_tileLoop_deepzoom4.py to only get tile coordinates

ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning

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Use 0b_tileLoop_deepzoom4.py to only get tile coordinates #59

Closed Tato14 closed 4 years ago

Tato14 commented 4 years ago

Hi, I am not quite familiar wih openslide code, so apologizes if this is kind of a trivial question. I would like to get only the coordinates where I could find tissue but I don't want to create tiles per se for the WSI. Could I use 0b_tileLoop_deepzoom4.py for it? Getting file names of the tiles would suffice. Thanks

ncoudray commented 4 years ago

Hi - Sorry, not sure I understand the question. To get coordinates, then you would need to open the svs files with another program. Maybe Imagescope, or ImageJ (with Bio-Formats plugin) HTH, Best, Nicolas