Open nilchia opened 1 month ago
I haven't looked at this section yet since redoing parts of the main code, I will put this first on my to-do list.
Cool, Thanks a lot!
Okay, looks like I had some test code in that file that was hijacking the trinuc count file. I removed that and rewired it so that it works correctly. I have these changes in develop
and will push out a new version soon.
That's great! Thanks @joshfactorial
Hello, @joshfactorial. Thanks for fixing the issue with the utilities. I am facing a new problem now :) when using
gen-mut-model
with the--outcounts
argument and a trinucleotide counts file I get this error:here is the code I used:
neat --log-name neat_gen-mut-model gen-mut-model H1N1.fa H1N1.vcf -o neat_gen-mut-model --save-trinuc
andneat --log-name neat_gen-mut-model2 gen-mut-model H1N1.fa H1N1.vcf -o neat_gen-mut-model2 --outcounts neat_gen-mut-model.trinuc.pickle.gz
Would you please help me with that? Thanks