ncsa / NEAT

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
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Incorporating utilities into NEAT in a streamlined way #33

Closed joshfactorial closed 1 month ago

joshfactorial commented 2 years ago

Allow for runs of the modeling utilities during a run of the sequencing simulator. For example, if you want to analyze fragment length of some sample data and use that model in your simulation, that would all be done in one step, by entering inputs in the config.