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ncsa / NEAT

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
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Installation failure due to version conflicts #83

Closed linxy29 closed 9 months ago

linxy29 commented 9 months ago

Describe the bug I tried to install the current version of NEAT and came across the error 'ERROR: Package 'neat' requires a different Python: 3.8.8 not in '<4.0,>=3.10' '.

To Reproduce

  1. git clone NEAT repo
  2. enter the NEAT directory
  3. follow instruction to install NEAT

    conda env create -f environmental.yml -n neat conda activate neat poetry build pip install dist/neat*whl

Expected behavior I assumed this error was caused by version conflicts in different files. Could anyone help with this or indicate the installation instructions for a previous stable version? Thank you

joshfactorial commented 9 months ago

Due to some compatability issues, this version of NEAT had a Python v3.10 requirement. If this is not possible, you can check out tagged versions or look at the releases to download files directly.

joshfactorial commented 9 months ago

We're working on building a container, as a solution, that will hopefully help with installation issues.

joshfactorial commented 9 months ago

Can we get some info on what OS you are using, what step gave you the error? I was unable to replicate on a baseline Ubuntu install. Which version of conda did you use? I've had problems occasionally with miniconda, so there may be an underlying dependency issue there.

linxy29 commented 9 months ago

Thanks for your help. It works after I specify the Python version as 3.10. I replaced conda env create -f environmental.yml -n neat with conda env create -f environment.yml -n neat python=3.10. By the way, the yml file name should be 'environment.yml'.

joshfactorial commented 9 months ago

I corrected that on the main branch. Thanks!

From: linxy29 @.> Sent: Wednesday, September 13, 2023 10:23 PM To: ncsa/NEAT @.> Cc: Allen, Josh @.>; Comment @.> Subject: Re: [ncsa/NEAT] Installation failure due to version conflicts (Issue #83)

Thanks for your help. It works after I specify the Python version as 3.10. I replaced conda env create -f environmental.yml -n neat with conda env create -f environment.yml -n neat python=3.10. By the way, the yml file name should be 'environment.yml'.

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