Extending OSD parsing tools

[brownag]

Strategic TODOs:

• [x] refactor code that relies on plyr and possibly some of the other dependencies (stringi, purrr, furrr, R.utils)
• [x] soil color prediction modeling, and model objects: where is the best place to do it / house the results
• [x] move soil color modeling evaluation to soil-color repository
• [x] get SC via soilDB::get_soilseries_from_NASIS() or saved copy in soilweb-data repo.
• [x] adapt fulltext input data to get_OSD source data, eventually move to SoilWeb or SoilWeb-data

Technical TODOs:

• [x] adapt TYPICAL PEDON parsing code to use JSON representation of OSDs

JSON format:

• [x] Return series names in title case? https://github.com/ncss-tech/soilDB/issues/95keep as-is
• [x] Trim off section headers from content (they are already in section)keep as-is until collapsing and reordering sections into groups is removed; the only way to reliably deparse combined sections is if their headers are included

parseOSD Issues:

• [x] extract additional data section and save ncss-tech/parse-osd#13 opened on May 13, 2020 by dylanbeaudette
• [x] old-style O horizons not parsed correcly ncss-tech/parse-osd#12 opened on Feb 10, 2020 by dylanbeaudette
• [x] add testing suite ncss-tech/parse-osd#11 opened on May 29, 2019 by dylanbeaudette
• [x] texture, pH, drainage class parsing is too greedy ncss-tech/parse-osd#10 opened on May 29, 2019 by dylanbeaudette
• [ ] combination horizons described with 'and' ncss-tech/parse-osd#9 opened on Dec 20, 2018 by dylanbeaudette'
• [x] fill missing colors based on nearby horizons ncss-tech/parse-osd#8 opened on Mar 14, 2018 by dylanbeaudette
• [x] figure out how to find OSDs edited since last parse date ncss-tech/parse-osd#5 opened on Sep 15, 2017 by dylanbeaudette
• [x] some brief narratives are missing (93) ncss-tech/parse-osd#4 opened on Sep 2, 2017 by dylanbeaudette

Related Changes in soilDB

https://github.com/ncss-tech/soilDB/issues/186

[dylanbeaudette]

Updates:

• I'm almost done adapting all of the old code related to fulltext searching. Once that is done, I'll move the SoilWeb prep code / results over to the SoilWeb-data repository. This includes everything related to fetchOSD and the fulltext search.
• I'm planning to move the soil color stuff to a different repository soon

[dylanbeaudette]

Quick update, all of the code used to prep SoilWeb related data has been moved over to SoilWeb-data. Relying on OSDregistry and SKB to do all of the parsing work.