Closed cyborginhas closed 5 months ago
Attention: 10 lines
in your changes are missing coverage. Please review.
Comparison is base (
b70235a
) 84.27% compared to head (eecc8d9
) 84.66%.
Files | Patch % | Lines |
---|---|---|
R/checks.R | 70.83% | 7 Missing :warning: |
R/helpers.R | 88.46% | 3 Missing :warning: |
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Closes #193
Updated associated extdata pest host tables to have additional columns: susceptiblity_mean, susceptibility_sd, mortality_rate_mean, mortality_rate_sd
Updated pest_host_table_wrong_columns check & error message & list scripts to include additional information needed to confirm that the pest_host_table includes the correct columns: hosts, susceptiblity_mean, susceptibility_sd, mortality_rate_mean, mortality_rate_sd, mortality_time_lag
Added competency_table_wrong_columns check (and associated code to error messages and lists scripts)
Added config$pest_host_table_list to calibrate, validate, pops_multirun, pops, and validate scripts.
Fixed competency typo in competency_table_list_creator function and associated extdata competency tables.
Updated all instances called pest_host_table$mortality_rate to pest_host_table$mortality_rate_mean