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ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data
GNU General Public License v3.0
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Get paired-end fastq files #139

Closed cytcc123 closed 5 years ago

cytcc123 commented 5 years ago

Hi,

I want to visualize fusion genes from fusioncatcher output, however, most programmes support paired-end fastq files. That's the one I got from fusioncatcher output: NSD2--RBPJP2__1919187--66635754_reads.fq.zip

Could you tell me how to get paired-end fastq files from fusioncatcher?

Thanks a lot, Yi

ndaniel commented 5 years ago

Hi @cytcc123

That is already paired-end fastq file! If one wants to get two FASTQ files out of that then for example seqtk seq -1 and seqtk seq -2 could be used.

Cheers, Daniel