IOError: [Errno 2] No such file or directory: banned_seq.fa

[evcon131]

I'm trying to restart and the file does exist but I still get this error

'ls' fcout/
banned_seq.fa
banned.txt
candidate_fusion-genes_further_eporcrlf2igh.txt
candidate_fusion-genes_further_mark.txt
candidate_fusion-genes_further_paired-reads.txt
candidate_fusion-genes_supporting_paired-reads.txt
count_reads_left_after_filtering.txt
exon-exon_junction_cut__nuc.txt
exon-exon_junction_cut__seq.txt
final-list_candidate-fusion-genes-t5.txt
fusioncatcher.log
fusioncatcher.log.001.bak
fusioncatcher.log.002.bak
fusioncatcher.log.003.bak
fusioncatcher.log.004.bak
fusioncatcher.log.005.bak
fusioncatcher.log.006.bak
fusioncatcher.log.007.bak
fusioncatcher.log.008.bak
gene-gene_longest.txt
gene-gene__nuc.txt
gene-gene__seq.txt
gene-gene_unique.fa
gene-gene_unique__nuc.txt
gene-gene_unique__seq.txt
info.txt
log_bowtie_reads_mapped-genome.stdout.txt
log_bowtie_reads_not-mapped-genome_but_mapped-transcriptome.stdout.txt
log_bowtie_reads_unique-mapped-genome_mapped-transcriptome.stdout.txt
log_counts_reads_gene-gene_no-str.txt
log_lengths_original_reads_final.txt
log_lengths_original_reads.txt
log_lengths_reads_gene-gene_no-str.txt
log_lengths_reads.txt
log_minimum_length_short_read.txt
log_number_of_reads_processed.txt
log_removed_single_reads1.txt
original.fq
original_important.fq.gz
preliminary-list_candidate-fusion-genes.txt
reads_filtered_not-mapped-genome_not-mapped-transcriptome_final2.txt
reads_filtered_not-mapped-genome_not-mapped-transcriptome.fq
reads_filtered_not-mapped-genome_transcriptome_trim2_3end.map.all.ex.good
reads_ids_unmapped.txt
restart.sh
star_sdjboverhang.txt
supporting-reads_gene-fusions_BLAT.zip
supporting-reads_gene-fusions_BOWTIE.zip
supporting-reads_gene-fusions_STAR.zip
tmp
viruses_bacteria_phages.txt

[ndaniel]

This looks like is the same like https://github.com/ndaniel/fusioncatcher/issues/160

Just create an empty file called "banned_seq.fa" and it should fix this.