ValueError for normal forms

[szilvajuhos]

Cheers, this line needs an extra conversion (likely the other similar lines are also in need of fixing):

https://github.com/ndaniel/fusioncatcher/blob/5813f67bc075cb45fd2b2cdcfb5c836ac5e0b6ef/bin/fusioncatcher.py#L8228

and should be like

nucleotides_ggu = int(float(file(outdir('gene-gene__nuc.txt'),'r').readline().strip()))

to avoid type conversion errors. Now we have

>>> int(file('gene-gene__nuc.txt','r').readline().strip())
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ValueError: invalid literal for int() with base 10: '2.43432e+09'

with float() it would be:

>>> int(float(file('gene-gene__nuc.txt','r').readline().strip()))
2434320000

[ndaniel]

Good point!

[ndaniel]

This will will/should be fixed and v1.30, which will be released soon.