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ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data
GNU General Public License v3.0
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synonyms.txt #186

Closed readmanchiu closed 3 years ago

readmanchiu commented 3 years ago

Hello,

I installed fusioncatcher using bionconda and was trying to run generate_banned.py and got the following error:

Generating the list of banned fusion genes...
Traceback (most recent call last):
  File "/home/rchiu/anaconda2/envs/fusions/bin/generate_banned.py", line 12806, in <module>
    loci = symbols.generate_loci(file_symbols)
  File "/home/rchiu/anaconda2/envs/fusions/bin/symbols.py", line 750, in generate_loci
    genes = [line.rstrip('\r\n').split('\t') for line in file(gene_symbols_filename,'r').readlines()]
IOError: [Errno 2] No such file or directory: './synonyms.txt'

Where can I find synonyms.txt?

Thanks Readman

readmanchiu commented 3 years ago

Figured out how to generate the file