I installed fusioncatcher using bionconda and was trying to run generate_banned.py and got the following error:
Generating the list of banned fusion genes...
Traceback (most recent call last):
File "/home/rchiu/anaconda2/envs/fusions/bin/generate_banned.py", line 12806, in <module>
loci = symbols.generate_loci(file_symbols)
File "/home/rchiu/anaconda2/envs/fusions/bin/symbols.py", line 750, in generate_loci
genes = [line.rstrip('\r\n').split('\t') for line in file(gene_symbols_filename,'r').readlines()]
IOError: [Errno 2] No such file or directory: './synonyms.txt'
Hello,
I installed fusioncatcher using bionconda and was trying to run
generate_banned.py
and got the following error:Where can I find
synonyms.txt
?Thanks Readman