Open hvelab opened 2 years ago
This will be fixed in the next official release.
Thanks! Is there any date on that release? Is there any patch? I work for the User Support Team of a Supercomputing Research center and we have users interested in that genome.
Thank you very much again and best regards.
Hi! I've tried several ways to download the genome of rattus_norvegicus, but it seems to always fail with a:
Which I find weird because that file exists in the Ensembl FTP server: http://ftp.ensembl.org/pub/release-105/fasta/rattus_norvegicus/dna/
I've executed this command:
fusioncatcher-build -g rattus_norvegicus -o /<my-path>
Also tried it specifying python2.7, and/or the ensembl path:
python2.7 bin/fusioncatcher-build.py -g rattus_norvegicus -o /<path> --ftp-ensembl-path=/pub/release-105/
I think it might be something about the Ensembl release, because with "homo_sapiens" it works perfectly.
Also I tried it "the dirty way", downloading the data with a wget, decompressing everything and renaming it as I saw that you do in the script for getting the data. But seems to not work.
Any kind of help would be appreciated :)
Thanks in advance!