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ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data
GNU General Public License v3.0
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fusioncatcher-build on mus_musculus issue #203

Closed PANX1233 closed 1 year ago

PANX1233 commented 1 year ago

Hi, I use the following command to build the mus_musculus database: fusioncatcher-build -g mus_musculus -o databases/mm39. After I finished the building processes, I check the file "version.txt". And I found that the corresponding UCSC database was version (mm10). I think it should be mm39. So it makes me feel confused.

fusioncatcher-build.py 1.33 Ensembl database version: 107 Organism: Mus musculus Genome version: GRCm39 NCBI Viral Genomes version: 2022-07-14 UCSC database version (mm10): 2019-10-20 RefSeq NCBI database version (downloaded thru UCSC database; mm10): 2020-09-13 Gencode database version: 30 Non-cancer tissues and cells (Babiceanu et al. Nucl. Acids Res. 2016) database version: 2022-09-14 Cancer Gene List database version: 2022-09-14 Oncogenes database version: 2022-09-14 TumorFusions (Hu et al. Nucleic Acids Research) database version: Nov. 2017 TCGA Fusions Dataset (Qingsong G., Cell Reports, 2018) version: April 2018 Pancreatic Tumor Patients (Bailey et al. Nature 2016) database version: 2022-09-14 CACG database version: 2022-09-14 DGD database version: 2022-09-14 rt-circ RNAs dataset (J.N. Vo, The Landscape of Circular RNA in Cancer, Cell, Feb. 2019):

PANX1233 commented 1 year ago

I've I solved this issule by modifying the code. Many thanks for providing such a software!