Open li1ba opened 1 year ago
Hi!
I'm trying to run FusionCatcher v1.33 and I get an error:
//////////////////////////////////////////////////////////////////////////////// Running: step = 78 Time: 12:53 Date: 2022-09-17 (elapsed time: 0d:0h:7m) \\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\ ==> Current working directory: '/opt' fastqtk \ lengths \ /datafiles/out/init-1_blox-0_2.fq \ /datafiles/out/log_lengths_original_reads_r_0.txt -------------------------------------------------------------------------------- +-->EXECUTING... ERROR: Workflow execution failed at step 78 while executing: ---------------- fastqtk \ lengths \ /datafiles/out/init-1_blox-0_2.fq \ /datafiles/out/log_lengths_original_reads_r_0.txt ---------------- * Size '/datafiles/out/init-1_blox-0_2.fq' = 16800589587 bytes * Size '/datafiles/out/log_lengths_original_reads_r_0.txt' = 0 bytes Executing second time the same step/command in order to capture error messages (i.e. STDERR)... ------------------------------------------- ERROR: Too long read sequence found. Maximum length of supported reads is 32768. ################################################################################ ################################################################################ TOTAL RUNNING TIME: 0 day(s), 0 hour(s), 7 minute(s), and 0 second(s) ################################################################################ ################################################################################
I checked both FASTQ files with FastQC and there are no reads longer than 101bp. Could you please help to solve this?
Thanks!
Hi!
I'm trying to run FusionCatcher v1.33 and I get an error:
I checked both FASTQ files with FastQC and there are no reads longer than 101bp. Could you please help to solve this?
Thanks!