Open windtalker6 opened 1 year ago
I've got it.
if you follow this to install:
git clone https://github.com/ndaniel/fusioncatcher
cd fusioncatcher/tools/
./install_tools.sh
cd ../data
./download-human-db.sh
the version of fusioncatcher is 1.35 but the version of fusioncatcher-build is 1.33
then fusioncatcher.py will check this and cease to run
I test fusioncatcher using the test fq files:
for the glibc error reason, I can only run it through a singularity image:
singularity exec -B /mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher:/mnt,/mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher/test/fq_dir:/tmp,/mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher/test/output:/opt /mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/centos7_yum2.simg /mnt/bin/fusioncatcher -d /mnt/data/current -i /tmp -o /opt
then there came the error:
I'm sure I used the very version matching the pipeline, for I installed the data followed the manual:
but when I run the command line for the second time, it can run to the end:
singularity exec -B /mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher:/mnt,/mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher/test/fq_dir:/tmp,/mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/fusioncatcher/test/output:/opt /mnt/lustre/user/wubin/01.Program/Scripts/02.software/Fusioncatcher/centos7_yum2.simg /mnt/bin/fusioncatcher -d /mnt/data/current -i /tmp -o /opt
however, it reported an error:
my question are :