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ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data
GNU General Public License v3.0
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Error installing fastqtk for fusioncatcher #213

Open pirateyoho opened 1 year ago

pirateyoho commented 1 year ago

Hello, I installed fusioncatcher and its dependencies using bootstrap.py, but when I ran test.sh after the installation, I got this error:

ERROR: Wrong version of SeqTK found ()! Found 'sh: seqtk: command not found'. It should be 'version: 1.2-r101c-dirty'. One may specify the path to the correct version in 'fusioncatcher/etc/configuration.cfg'.

I tried performing the installation manually into /fusioncatcher/tools and got another error:

git clone https://github.com/ndaniel/fastqtk.git
cd fastqtk
make
gcc -g -Wall -O2 -Wno-unused-function fastqtk.c -o fastqtk -lz -lm
fastqtk.c:43:22: error: initializer element is not a compile-time constant
const int CARS_LEN = strlen(CARS);
                     ^~~~~~~~~~~~
1 error generated.
make: *** [fastqtk] Error 1

Any idea what's going on with the installation of this program, and how I could resolve it? Thanks.

fusioncatcher.log info.txt