I encountered an error while trying to download the genome of Canis lupus familiaris from the Ensembl server using this commend.
fusioncatcher-build.py -g canis_lupus_familiaris -o genome_build
As a result, it fails to find the genome and mitochondria files and repeatedly displays an error message.
fusioncatcher-build.py -g canis_lupus_familiaris -o genome_build
get_genome.py \
--organism canis_lupus_familiaris \
--server ftp.ensembl.org \
--output <my path>
--------------------------------------------------------------------------------
+-->EXECUTING...
Downloading the genome of organism 'canis_lupus_familiaris' from Ensembl!
230 Login successful.
ERROR: Cannot find the genome and mitochondria files!
['Canis_lupus_familiaris.ROS_Cfam_1.0.dna.toplevel.fa.gz']
ERROR: Workflow execution failed at step 4 while executing:
----------------
get_genome.py \
--organism canis_lupus_familiaris \
--server ftp.ensembl.org \
--output <my path>
----------------
Executing second time the same step/command in order to capture error messages (i.e. STDERR)...
-------------------------------------------
Downloading the genome of organism 'canis_lupus_familiaris' from Ensembl!
230 Login successful.
ERROR: Cannot find the genome and mitochondria files!
['Canis_lupus_familiaris.ROS_Cfam_1.0.dna.toplevel.fa.gz']
################################################################################
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TOTAL RUNNING TIME: 0 day(s), 0 hour(s), 0 minute(s), and 7 second(s)
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The reference genome appears to lack the mitochondrial (MT) sequence, which is required for FusionCatcher to function correctly.
In this case, am I unable to use FusionCatcher?
If you have any solutions to resolve this issue, I would greatly appreciate your assistance.
Hi,
I encountered an error while trying to download the genome of Canis lupus familiaris from the Ensembl server using this commend.
fusioncatcher-build.py -g canis_lupus_familiaris -o genome_build
As a result, it fails to find the genome and mitochondria files and repeatedly displays an error message.
The reference genome appears to lack the mitochondrial (MT) sequence, which is required for FusionCatcher to function correctly.
In this case, am I unable to use FusionCatcher?
If you have any solutions to resolve this issue, I would greatly appreciate your assistance.
Any help is appreciated.
Thank you.