batch failure logging and qc_testing / priors + region props

ndcn / infer-subc

A plugin for multi-channel image segmentation (hard fork/hack from Allen Institute for Cell Science)

https://ndcn.github.io/infer-subc/

BSD 3-Clause "New" or "Revised" License

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batch failure logging and qc_testing / priors + region props #9

Open ergonyc opened 1 year ago

ergonyc commented 1 year ago

~~QC logging.~~ We need to fail nicely when the segmentations fail. We will do this by collecting the regionprops from the segmented objects and comparing with prior expection.

[x] regionprops. this should be straighforward. at first its just "area" and numbers of organelles, and "total" areas.
[ ] priors. need a class wrapper or something to contain the priors for the

ergonyc commented 1 year ago

Decision has been made to depricate QC loggin for now. REGIONPROPS still active