Feature metadata tables not loading

[bnovotny]

Describe the bug Tables for feature metadata on both the "Playground/Table" tab and the "Data Table/Feature Meta" tab perpetually display "Processing..." and never load.

To Reproduce Steps to reproduce the behavior:

1. Launch omicser
2. Load data on "Ingest" tab
3. Go to "Playground" tab, click on "Data Table"
4. Go to "Data Table" tab, click on "Feature Meta"

Expected behavior Table with feature metadata from "var_annot" should display.

Screenshots

Desktop (please complete the following information):

• OS: Windows 10
• Browser: Chrome

Additional context Could be a format rendering issue in datatable, however I don't think it's a problem with attempting to format PubChem IDs (numeric IDs that need to be displayed as character in the table), because the issue persists when I remove the PubChem ID column in my data frame.

[ricoderks]

I have 3 example datasets:

• data from domenico: shows both tables
• data from lipidyzer: shows only feature meta table in data table tab
• data from lipidyzer: shows only feature meta table in data table tab

Only for the latter 2 I get warnings in R that the output will contain list-cols. I'll look deeper in to this.

[ricoderks]

Getting rid of the list-cols didn't solve the problem.

@bnovotny can you send me your database in a zip file? I don't have a dataset where the feature meta table is not working in the data table tab.

@ergonyc I tracked the problem down to this piece of code:

render_num_js = JS(
        "function(data, type, row, meta){",
        "return type === 'display' ?",
        "data.toExponential(2) : data;",
        "}")

This piece of javascript is causing the data.table to hang on processing. If I leave this out of columnDefs the table renders nicely. Looking further I found there are NA's in one column. My javascript skills are limited to reading javascript. Haven't figured out yet how to fix this function.

This didn't work.

render_num_js = JS(
        "function(data, type, row, meta){",
        "return type === 'display' && !isNaN(data) ?",
        "data.toExponential(2) : data;",
        "}")

[ricoderks]

PR #165 should fix this problem. The reason why I didn't see the issue in the data table tab is that I was only showing the first 25 rows and the first NA appears later.

[bnovotny]

Thanks! I can't send my database but I will try it with the changes you implemented.

[ergonyc]

I'm going to leave this open for now and see what kind of crazy tables might get rendered and if the JavaScript is robust.

Great work @bnovotny @ricoderks !!