Open sha1987-sss opened 3 years ago
Hi, Could you first try again with the latest version, because this one is very old... And make sure you download the config file fro the correct version, they are not matching So just redownload the latest version and start again Also you put as type "cholo", it should be "chloro"
hello,I am trying to use this software to assemble the chloroplast genome, and the result shows INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE. I want to know where mistake happened, DoIyou have any suggestion?The following is my log_Test.txt
NOVOPlasty: The Organelle Assembler Version 3.1 Author: Nicolas Dierckxsens, (c) 2015-2019
Input parameters from the configuration file: Verify if everything is correct
Project:
Project name = Test Type = cholo Genome range = 130000-170000 K-mer = 39 Max memory = Extended log = 0 Save assembled reads = no Seed Input = /w/user249/data4/cleandata/Seed_RUBP_cp.fasta Reference sequence = Variance detection = Heteroplasmy = HP exclude list = Chloroplast sequence =
Dataset 1:
Read Length = 151 Insert size = 300 Platform = illumina Single/Paired = PE Combined reads = Forward reads = /w/user249/data4/cleandata/Nitella_FDSW202226034-1r_1.clean.fq Reverse reads = /w/user249/data4/cleandata/Nitella_FDSW202226034-1r_2.clean.fq
Heteroplasmy:
Heteroplasmy = HP exclude list = PCR-free =
Optional:
Insert size auto = yes Insert range = 1.9 Insert range strict = 1.3 Use Quality Scores = no
Subsampled fraction: 100.00 %
Retrieve Seed...
INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE