Closed occasional-it-guy closed 3 years ago
No it doesn't have to be config.txt, it can be any file name. But I think it is not a good idea to have a space in your filename, it won't be recognised, best to never use that for any command intthe terminal. Can replace it with _
Does the config filename have to be config.txt? I have my config files written up as config (name of sample).txt and I tried running the following command
perl NOVOPlasty/NOVOPlasty4.1.pl -c Sequenced_Aphyllon_Data/NOVOPlastyData/config A_validum_validum_Mistreeta.txt
and received
`----------------------------------------------- NOVOPlasty: The Organelle Assembler Version 4.1 Author: Nicolas Dierckxsens, (c) 2015-2020
Error:Can't open the configuration file, please check the manual!
Usage: perl NOVOPlasty4.1.pl -c config.txt`
Any help would be much appreciated!