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ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
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Question about specific name for config files #161

Closed occasional-it-guy closed 3 years ago

occasional-it-guy commented 3 years ago

Does the config filename have to be config.txt? I have my config files written up as config (name of sample).txt and I tried running the following command

perl NOVOPlasty/NOVOPlasty4.1.pl -c Sequenced_Aphyllon_Data/NOVOPlastyData/config A_validum_validum_Mistreeta.txt

and received

`----------------------------------------------- NOVOPlasty: The Organelle Assembler Version 4.1 Author: Nicolas Dierckxsens, (c) 2015-2020

Error:Can't open the configuration file, please check the manual!

Usage: perl NOVOPlasty4.1.pl -c config.txt`

Any help would be much appreciated!

ndierckx commented 3 years ago

No it doesn't have to be config.txt, it can be any file name. But I think it is not a good idea to have a space in your filename, it won't be recognised, best to never use that for any command intthe terminal. Can replace it with _