search

ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
Other
176 stars 63 forks source link

Results and input are the same size #171

Closed bioramg closed 3 years ago

bioramg commented 3 years ago

Hello sir, I'm trying to assemble the plant chloroplast genome. So, I used the rbcL gene from the same cp genome as a seed for the assembly. But, the results are just my input seed sequence data only. I have used matK seed sequence and 65kb contig as the seed sequences. But getting the same results. What could be the problem? How to solve it?

I've attached the extended log file. log_extended_cpl.txt

Looking forward to hearing from you I really appreciate any help you can provide. Best,

ndierckx commented 3 years ago

Hi,

I saw you didn't fill in crucial information in the config file

You left genome range, read length and insert size blank

Greets,

Nicolas

From: bioramg @.> Sent: 16 April 2021 14:57 To: ndierckx/NOVOPlasty @.> Cc: Subscribed @.***> Subject: [ndierckx/NOVOPlasty] Results and input are the same size (#171)

Hello sir, I'm trying to assemble the plant chloroplast genome. So, I used the rbcL gene from the same cp genome as a seed for the assembly. But, the results are just my input seed sequence data only. I have used matK seed sequence and 65kb contig as the seed sequences. But getting the same results. What could be the problem? How to solve it?

I've attached the extended log file. log_extended_cpl.txthttps://github.com/ndierckx/NOVOPlasty/files/6325176/log_extended_cpl.txt

Looking forward to hearing from you Thank you in advance Best,

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/ndierckx/NOVOPlasty/issues/171, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ADSSIFO7HFJOCFZACERBW2DTJAX3TANCNFSM43BPSHEA.

bioramg commented 3 years ago

Dear Nicolas, Thank you for the suggestion. It's working perfectly now.