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ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
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Can NOVOPlasty be used to assembly nuclear gene? #176

Open yiranzhimo opened 3 years ago

yiranzhimo commented 3 years ago

I need to assembly a nuclear gene, so I tried NOVOPlasty, but the result file only shows some contigs, such as _contigs_tmpproject.txt and _Contigs_1project.fasta and which may means the assembly quality is poor. So, I want to figure out whether someone had faced the same problem with me.

ndierckx commented 3 years ago

You can try with extended log set to 1 and send me that file But if you try a nuclear gene, it will never circularise, so will only give a Contigs_1_project.fasta file how long did it assemble