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ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
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depth of coverage #179

Closed Bibi82 closed 2 years ago

Bibi82 commented 2 years ago

Hi, I am assembling some mitochondrial genomes using shotgun sequencing data. Is there a way to find out the depth of coverage for the contigs?

ndierckx commented 2 years ago

Hi, In the log file, you can find the average sequencing depth, but not individually per contig.

Bibi82 commented 2 years ago

Thanks!