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ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
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plant mitochondria genomes #184

Open fengyuanli304 opened 2 years ago

fengyuanli304 commented 2 years ago

Hello, I tried to assemble plant mitochondria genomes and started using the following config. The length of the merged_contigs is shorter than that of the mitochondrial genome in other related species. In addition, there are many options. What should I do to improve these results? Waiting for your reply.

Sincerely log_salxi_test.txt salix_mit_config.txt

ndierckx commented 2 years ago

You could try to combine results of different assemblers, but in most cases plant mitochondria can only be assembled with long reads, though to high number of duplicated regions.