search

ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller
Other
170 stars 62 forks source link

NOVOplasty error assembly #194

Closed labrechai closed 1 year ago

labrechai commented 1 year ago

(ee) nbfgr@nbfgr-Precision-3650-Tower:~/Software$ NOVOPlasty4.3.1.pl -c config.txt

NOVOPlasty: The Organelle Assembler Version 4.3.1 Author: Nicolas Dierckxsens, (c) 2015-2020

Input parameters from the configuration file: Verify if everything is correct

Project:

Project name = CM_assembly Type = mito Genome range = 12000-22000 K-mer = 21 Max memory = 100 Extended log = 1 Save assembled reads = yes Seed Input = /home/nbfgr/Software/seed.fasta Extend seed directly = Reference sequence = Variance detection = Chloroplast sequence =

Dataset 1:

Read Length = 150 Insert size = 300 Platform = illumina Single/Paired = PE Combined reads = Forward reads = /home/nbfgr/Software/CM-1030-Blood-300bp_R1.fastq Reverse reads = /home/nbfgr/Software/CM-1030-Blood-300bp_R2.fastq Store Hash = yes

Heteroplasmy:

Heteroplasmy = HP exclude list = PCR-free =

Optional:

Insert size auto = yes Use Quality Scores = Output path = /home/nbfgr/Software/Mito_assembly/

Reading Input......OK

Building Hash Table...

bu i am not getting assembly or the logs after 2-3 hrs the terminal atomically closed and all file are of 0 bytes including logs please help

Screenshot from 2022-08-11 13-59-12

ndierckx commented 1 year ago

Hi, The problem is resolved?

labrechai commented 1 year ago

Yes thanks for your concerns

On Thu, 11 Aug 2022, 17:02 Nicolas Dierckxsens, @.***> wrote:

Hi, The problem is resolved?

— Reply to this email directly, view it on GitHub https://github.com/ndierckx/NOVOPlasty/issues/194#issuecomment-1211867974, or unsubscribe https://github.com/notifications/unsubscribe-auth/A2PHFMRGSUXGUAZL5TJJNYTVYTQGVANCNFSM56HJUVXA . You are receiving this because you modified the open/close state.Message ID: @.***>