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ndovro / ZWA

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command for paired end reads #1

Open shanmugavadivelps opened 2 years ago

shanmugavadivelps commented 2 years ago

Sir,

I need to use ZWA for paired end data. is the below command ok for paired end data?. ./zwa.sh RAW_READS1.fastq RAW_READS1.fastq reference.fasta

ndovro commented 2 years ago

Hello, ZWA was designed for single-end data but I don't see why you couldn't apply it after merging your pair-end sequences (after using something like PEAR). If you provide a single fastq it should work fine.

shanmugavadivelps commented 2 years ago

thanks sir, I will try by merging paired end data.

On Sat, Oct 30, 2021 at 12:04 PM ndovro @.***> wrote:

Hello, ZWA was designed for single-end data but I don't see why you couldn't apply it after merging your pair-end sequences (after using something like PEAR). If you provide a single fastq it should work fine.

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