As merge_samples_across_lanes.sh doesn't take any arguments for the moment i manually changed the dir variable in the script for each sequence project directory (P12002 and P14052).
I tested out the script using a short interactive session.
interactive -A naiss2024-5-1 -p core -n 4 -t 00:30:00 and it completed P14052 in 20 min.
For P12002 there are much more samples, so i started a longer interactive session,
interactive -A naiss2024-5-1 -p core -n 4 -t 02:30:00.
In final version, i could customize the script to handle arguments so one can easily loop through the directories.
As
merge_samples_across_lanes.shdoesn't take any arguments for the moment i manually changed thedirvariable in the script for each sequence project directory (P12002 and P14052).I tested out the script using a short interactive session.
interactive -A naiss2024-5-1 -p core -n 4 -t 00:30:00and it completed P14052 in 20 min.For P12002 there are much more samples, so i started a longer interactive session,
interactive -A naiss2024-5-1 -p core -n 4 -t 02:30:00.In final version, i could customize the script to handle arguments so one can easily loop through the directories.
Total file size of
00-RAW: 849GBBAD MERGE, total file size is : 821GB