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ndreey / ghost-magnet

Molecular Bioinformatics BSc thesis project at University of Skövde
MIT License
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Create Nucleotide quality scores (-q1 and -q2) #11

Closed ndreey closed 1 year ago

ndreey commented 1 year ago

Read through and see if you can understand the instructions and create quality files similar to those of the mock data that CAMI2 generated.

ndreey commented 1 year ago

Run mock data through FastQC and get the tab-separated file.

FastQC can generate a report that summarizes the quality of the sequence data. One of the sections in the report is "Per Base Quality" which shows the quality scores for each position in the reads. Quality scores can be saved as a tab-separated file by pressing the "Export" button.

ndreey commented 1 year ago

The quality scores/profiles can be found HERE

However, closing as i will be running CAMISIM