ndreey
commented
1 year ago Add references about endophyte ratios
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"After quality control and chloroplast or mitochondrial sequences removal, a total of 530,608 bacterial sequences and 2,442,189 fungal sequences were obtained from 24 samples. These sequences were assigned to 636 bacterial OTUs and 718 fungal OTUs, respectively." - Lin et al., 2022, Distribution pattern of endophytic bacteria and fungi in tea plants.
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"The remaining phyla viz., Cyanobacteria (blue green algae), Ascomycota and Basidiomycota (fungi) were less prominent in the metagenomes of GPU and UM" - Prasannakumar et al., 2020, Metagenome sequencing of fingermillet-associated microbial consortia provides insights into structural and functional diversity of endophytes.
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"a total of 90.9 million reads from 16S and 86.8 million reads from ITS were clustered at ≥97% sequence identity using UPARSE. After processing, a total of 23,811 bacterial and 11,727 fungal operational taxonomy units (OTUs) were recovered." - Soares Correa de Souza et al., 2016, Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome
Find some articles describing the found endophyte ratios. Otherwise, go with 70-80% fungi, 20-30% bacteria. Then dilute these for the abundance of P. zijinensis