BEAUTi: tree prior Constant Size is not working for node calibration

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I have performed the xml file using beauty 1.5.2. and I’ve constrained
a taxa in the same way that i have done using Beauty 1.4.8., after i
have calibrated the TMRCA prior using a normal distribution.

When i run this file in BEAST 1.5.2. the programme said:

WARNING: unexpected element in coalescentTree:startingTree:  tmrca in
constrainedTaxa 

Original issue reported on code.google.com by dong.w.xie@gmail.com on 13 Oct 2009 at 9:23

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xml code example?

Original comment by jhe...@gmail.com on 14 Oct 2009 at 10:18

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This tree node calibration only does not work with Tree Prior:
1) Constant Size;
2) Logistic Growth;

BEAUTi: load any data; add any taxon set; choose Normal in prior tmrca(??); 
choose
Constant Size or Logistic Growth.

The XML has exception:
WARNING: unexpected element in coalescentTree:startingTree:  tmrca in constraine
dTaxa
Error running file: b3.xml
Fatal exception: failed to merge trees after 1000 tries!
java.lang.RuntimeException: failed to merge trees after 1000 tries!
        at dr.evolution.coalescent.CoalescentSimulator.simulateCoalescent(Unknow
n Source)
        at dr.evolution.coalescent.CoalescentSimulator.simulateTree(Unknown Sour
ce)
        at dr.evomodel.coalescent.CoalescentSimulator.simulateTree(Unknown Sourc
e)
        at dr.evomodel.coalescent.CoalescentSimulator$1.parseXMLObject(Unknown S
ource)
        at dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
        at dr.xml.XMLParser.convert(Unknown Source)
        at dr.xml.XMLParser.convert(Unknown Source)
        at dr.xml.XMLParser.parse(Unknown Source)
        at dr.app.beast.BeastMain.<init>(Unknown Source)
        at dr.app.beast.BeastMain.main(Unknown Source)

Original comment by dong.w.xie@gmail.com on 16 Oct 2009 at 12:46

• Changed state: Started

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 Issue 128: BEAUTi: tree prior Logistic Growth is not available for calibration

Original comment by dong.w.xie@gmail.com on 16 Oct 2009 at 12:54

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change tittle.

Original comment by dong.w.xie@gmail.com on 16 Oct 2009 at 12:57

• Changed title: BEAUTi: tree prior Constant Size and Logistic Growth is not working for node calibration

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solve Issue 128: BEAUTi: tree prior Logistic Growth is not available for 
calibration

Original comment by dong.w.xie@gmail.com on 23 Oct 2009 at 3:54

• Changed title: BEAUTi: tree prior Constant Size is not working for node calibration

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Original comment by dong.w.xie@gmail.com on 12 Nov 2009 at 11:19

• Changed state: Fixed