nedaz / kraken

A universal genomic coordinate translator for comparative genomics
GNU General Public License v3.0
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transfer of annotations in genome with duplications? #3

Open scalefreegan opened 7 years ago

scalefreegan commented 7 years ago

Feature request: An option for one-to-many mappings.

An option in Kraken that would allow transfer of a single annotation in query genome to multiple locations in target genome given syntenic mapping. Ideally this would also amend the feature name to indicate its number (e.g. gene-1, gene-2, ... etc). Maybe also additional info (e.g. origin, # of copies) in the attribute column.