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nedialkova-lab / mim-tRNAseq

Modification-induced misincorporation tRNA sequencing
GNU General Public License v3.0
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error when install mimseq through mamba: ModuleNotFoundError: No module named 'conda._vendor.auxlib' #44

Closed AiweiWu closed 1 year ago

AiweiWu commented 1 year ago

An error was reported when I install mimseq through mamba shown as bellow:

mamba install -c bioconda mimseq Traceback (most recent call last): File "/home/data/awwu/00.install/miniconda3/envs/mimseq_5/bin/mamba", line 7, in from mamba.mamba import main File "/home/data/awwu/00.install/miniconda3/envs/mimseq_5/lib/python3.7/site-packages/mamba/mamba.py", line 53, in from mamba.utils import get_index, to_package_record_from_subjson, _supplement_index_with_system File "/home/data/awwu/00.install/miniconda3/envs/mimseq_5/lib/python3.7/site-packages/mamba/utils.py", line 7, in from .FastSubdirData import FastSubdirData File "/home/data/awwu/00.install/miniconda3/envs/mimseq_5/lib/python3.7/site-packages/mamba/FastSubdirData.py", line 23, in from conda._vendor.auxlib.ish import dals ModuleNotFoundError: No module named 'conda._vendor.auxlib'

conda version: 23.7.2

drewjbeh commented 1 year ago

Hi there,

This seems to be a conda/mamba issue and not a mimseq issue (https://github.com/mamba-org/mamba/issues/1583). I would imagine installing any other package with mamba produces the same result. I suggest following some of the fixes in the link above, or upgrading/reinstalling mamba. My personal suggestion is the mambaforge version of miniforge (https://github.com/conda-forge/miniforge)